Report for Sequence Feature Glyma09g39280
Feature Type: gene_model
Chromosome: Gm09
Start: 44397766
stop: 44398820
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g39280
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G61460 AT
Annotation by Michelle Graham. TAIR10: brassinosteroid-responsive RING-H2 | chr3:22741701-22742213 REVERSE LENGTH=170
SoyBase E_val: 8.00E-58 ISS
GO:0009741 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus
SoyBase N/A ISS
GO:0010200 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to chitin
SoyBase N/A ISS
GO:0030003 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis
SoyBase N/A ISS
GO:0070838 GO-bp
Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
PTHR22764 Panther
RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2).
JGI ISS
PTHR22764:SF27 Panther
ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI
JGI ISS
PF00097 PFAM
Zinc finger, C3HC4 type (RING finger)
JGI ISS
UniRef100_G9DD71 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase E3 n=1 Tax=Jatropha curcas RepID=G9DD71_9ROSI
SoyBase E_val: 2.00E-55 ISS
UniRef100_I1L6H3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6H3_SOYBN
SoyBase E_val: 8.00E-121 ISS
Expression Patterns of Glyma09g39280
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma09g39280
Paralog Evidence Comments
Glyma18g47020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g39280 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g256800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g39280
Coding sequences of Glyma09g39280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g39280.1 sequence type=CDS gene model=Glyma09g39280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTTTTCCCGTAGGGTACCCGGAGCTCCTGGTTCCGAAAATGTTCCTCCACGCGCTTTCCTTCCTCGCGTGGCTCCGCTCCCTCGTTTTCGCCCTCTTCCGCCTCCTCCGCATCTCCGACCTCCTCGACACTGAACCTTCCCCCTCCGACCTCCCTCCGCCGGCTCCGCCGCGCGAGCCGACGCTATCCGCACTTCTCATCCGAGAGTTTCTCCCCGTGGCCGCCTTCCGCGACCTCGCCAGCGCCTCCGGAGTAGATCCTCCTCCGTCGGGATGCGCCGTGTGCCTGAGCGAGTTTTCCGAAGAAGAGGAAATCCGGTGCATGGCGAACTGCAAGCACATTTTCCACTGCGCGTGCGTGGACCGTTGGATCGATCACGATCAGAAGACGTGTCCGCTGTGCAGAAGTACGTTGGTGCCACATCAGAAGCTCGAAGAATACAACCAGCGACTATGGGCGGCTTCTGGAGTTTCGCAGTTTTATTACCAAGACGATTACACGGCTTCCCTCTGA
Predicted protein sequences of Glyma09g39280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g39280.1 sequence type=predicted peptide gene model=Glyma09g39280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGFPVGYPELLVPKMFLHALSFLAWLRSLVFALFRLLRISDLLDTEPSPSDLPPPAPPREPTLSALLIREFLPVAAFRDLASASGVDPPPSGCAVCLSEFSEEEEIRCMANCKHIFHCACVDRWIDHDQKTCPLCRSTLVPHQKLEEYNQRLWAASGVSQFYYQDDYTASL*
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